Line |
Branch |
Exec |
Source |
1 |
|
|
// ./tests/catch2-tests [section] -s |
2 |
|
|
|
3 |
|
|
|
4 |
|
|
/////////////////////// Qt includes |
5 |
|
|
#include <QDebug> |
6 |
|
|
#include <QString> |
7 |
|
|
#include <QDir> |
8 |
|
|
|
9 |
|
|
|
10 |
|
|
/////////////////////// IsoSpec |
11 |
|
|
#include <IsoSpec++/isoSpec++.h> |
12 |
|
|
#include <IsoSpec++/element_tables.h> |
13 |
|
|
|
14 |
|
|
|
15 |
|
|
/////////////////////// Catch2 includes |
16 |
|
|
#include <catch2/catch_test_macros.hpp> |
17 |
|
|
#include <catch2/matchers/catch_matchers_floating_point.hpp> |
18 |
|
|
|
19 |
|
|
|
20 |
|
|
/////////////////////// Local includes |
21 |
|
|
#include "tests-config.h" |
22 |
|
|
#include <libXpertMass/Isotope.hpp> |
23 |
|
|
#include <libXpertMass/IsotopicDataLibraryHandler.hpp> |
24 |
|
|
#include <libXpertMass/Formula.hpp> |
25 |
|
|
|
26 |
|
|
namespace MsXpS |
27 |
|
|
{ |
28 |
|
|
|
29 |
|
|
namespace libXpertMass |
30 |
|
|
{ |
31 |
|
|
|
32 |
|
|
QString glucose_formula_string("C6H12O6"); |
33 |
|
|
QString saccharose_formula_string("C12H22O11"); |
34 |
|
|
QString action_formula_string_MA_dipeptidyl("+C5H11N1O2S1-H2O+C3H7N1O2-H2O"); |
35 |
|
|
QString action_formula_string_with_title( |
36 |
|
|
"\"MA dipeptide\"+C5H11N1O2S1-H2O+C3H7N1O2-H2O"); |
37 |
|
|
|
38 |
|
12 |
SCENARIO("Construction of Formula_s with a simple no-action string") |
39 |
|
|
{ |
40 |
|
|
|
41 |
8/14
✓ Branch 1 taken 12 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 12 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 12 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 12 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 12 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 12 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 8 times.
|
12 |
WHEN("Constructed, using the constructor and the copy constructor") |
42 |
|
|
{ |
43 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
Formula formula_c6h12O6(glucose_formula_string); |
44 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
Formula formula_c6h12O6_copy(formula_c6h12O6); |
45 |
|
|
|
46 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("The the formula string is set to the member datum") |
47 |
|
|
{ |
48 |
8/20
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 4 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 4 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
4 |
REQUIRE(formula_c6h12O6.toString().toStdString() == |
49 |
|
|
glucose_formula_string.toStdString()); |
50 |
8/20
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 4 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 4 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
4 |
REQUIRE(formula_c6h12O6_copy.toString().toStdString() == |
51 |
|
|
glucose_formula_string.toStdString()); |
52 |
|
4 |
} |
53 |
|
16 |
} |
54 |
|
|
|
55 |
8/14
✓ Branch 1 taken 12 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 12 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 12 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 12 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 12 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 12 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 8 times.
|
12 |
AND_WHEN("Setting another formula string manually") |
56 |
|
|
{ |
57 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
Formula formula_c6h12O6(glucose_formula_string); |
58 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
formula_c6h12O6.setFormula(saccharose_formula_string); |
59 |
|
|
|
60 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("The new formula string is set accordingly to the member datum") |
61 |
|
|
{ |
62 |
8/20
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 4 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 4 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
4 |
REQUIRE(formula_c6h12O6.toString().toStdString() == |
63 |
|
|
saccharose_formula_string.toStdString()); |
64 |
|
4 |
} |
65 |
|
16 |
} |
66 |
|
|
|
67 |
8/14
✓ Branch 1 taken 12 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 12 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 12 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 12 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 12 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 12 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 8 times.
|
12 |
AND_WHEN("Appending another formula string") |
68 |
|
|
{ |
69 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
Formula formula_c6h12O6(glucose_formula_string); |
70 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
formula_c6h12O6.appendFormula(saccharose_formula_string); |
71 |
|
4 |
QString after_appending_fomula(glucose_formula_string); |
72 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
after_appending_fomula += saccharose_formula_string; |
73 |
|
|
|
74 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("The member formula string is updated accordingly") |
75 |
|
|
{ |
76 |
8/20
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 4 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 4 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
4 |
REQUIRE(formula_c6h12O6.toString().toStdString() == |
77 |
|
|
after_appending_fomula.toStdString()); |
78 |
|
4 |
} |
79 |
|
16 |
} |
80 |
|
12 |
} |
81 |
|
|
|
82 |
|
4 |
SCENARIO("Construction of Formula_s with another Formula instance") |
83 |
|
|
{ |
84 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
Formula formula_c6h12O6(glucose_formula_string); |
85 |
|
|
|
86 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
WHEN("Constructed with another Formula instance") |
87 |
|
|
{ |
88 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
Formula formula_c6h12O6_copy(formula_c6h12O6); |
89 |
|
|
|
90 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("The Formula string is set to the member datum") |
91 |
|
|
{ |
92 |
8/20
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 4 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 4 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
4 |
REQUIRE(formula_c6h12O6.toString().toStdString() == |
93 |
|
|
glucose_formula_string.toStdString()); |
94 |
8/20
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 4 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 4 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
4 |
REQUIRE(formula_c6h12O6_copy.toString().toStdString() == |
95 |
|
|
glucose_formula_string.toStdString()); |
96 |
|
4 |
} |
97 |
|
8 |
} |
98 |
|
4 |
} |
99 |
|
|
|
100 |
|
20 |
SCENARIO("Syntax checking of an action Formula with or without the title") |
101 |
|
|
{ |
102 |
1/2
✓ Branch 1 taken 20 times.
✗ Branch 2 not taken.
|
20 |
Formula formula_MA_dipeptidyl(action_formula_string_MA_dipeptidyl); |
103 |
1/2
✓ Branch 1 taken 20 times.
✗ Branch 2 not taken.
|
20 |
Formula titled_formula_MA_dipeptidyl(action_formula_string_with_title); |
104 |
|
|
|
105 |
8/14
✓ Branch 1 taken 20 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 20 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 20 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 20 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 20 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 20 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 16 times.
|
20 |
WHEN("Constructed, the formula string is set to the member datum as is") |
106 |
|
|
{ |
107 |
8/20
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 4 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 4 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
4 |
REQUIRE(formula_MA_dipeptidyl.toString().toStdString() == |
108 |
|
|
action_formula_string_MA_dipeptidyl.toStdString()); |
109 |
8/20
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 4 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 4 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
4 |
REQUIRE(titled_formula_MA_dipeptidyl.toString().toStdString() == |
110 |
|
|
action_formula_string_with_title.toStdString()); |
111 |
|
20 |
} |
112 |
|
|
|
113 |
8/14
✓ Branch 1 taken 20 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 20 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 20 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 20 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 20 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 20 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 16 times.
|
20 |
AND_WHEN("Checked without forcing an index even for single atoms") |
114 |
|
|
{ |
115 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
formula_MA_dipeptidyl.setForceCountIndex(false); |
116 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
titled_formula_MA_dipeptidyl.setForceCountIndex(false); |
117 |
|
|
|
118 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("Checking succeeds") |
119 |
|
|
{ |
120 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 20 taken 4 times.
✗ Branch 21 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
✗ Branch 29 not taken.
✗ Branch 30 not taken.
|
4 |
REQUIRE(formula_MA_dipeptidyl.checkSyntax() == true); |
121 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 20 taken 4 times.
✗ Branch 21 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
✗ Branch 29 not taken.
✗ Branch 30 not taken.
|
4 |
REQUIRE(titled_formula_MA_dipeptidyl.checkSyntax() == true); |
122 |
|
4 |
} |
123 |
|
20 |
} |
124 |
|
|
|
125 |
8/14
✓ Branch 1 taken 20 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 20 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 20 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 20 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 20 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 20 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 16 times.
|
20 |
AND_WHEN("Checked with forcing an index even for single atoms") |
126 |
|
|
{ |
127 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
formula_MA_dipeptidyl.setForceCountIndex(true); |
128 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
titled_formula_MA_dipeptidyl.setForceCountIndex(true); |
129 |
|
|
|
130 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("Checking fails") |
131 |
|
|
{ |
132 |
|
|
|
133 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 20 taken 4 times.
✗ Branch 21 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
✗ Branch 29 not taken.
✗ Branch 30 not taken.
|
4 |
REQUIRE(formula_MA_dipeptidyl.checkSyntax() == false); |
134 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 20 taken 4 times.
✗ Branch 21 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
✗ Branch 29 not taken.
✗ Branch 30 not taken.
|
4 |
REQUIRE(titled_formula_MA_dipeptidyl.checkSyntax() == false); |
135 |
|
4 |
} |
136 |
|
20 |
} |
137 |
8/14
✓ Branch 1 taken 20 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 20 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 20 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 20 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 20 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 20 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 16 times.
|
20 |
AND_WHEN("Checking an invalid Formula starting with a cipher") |
138 |
|
|
{ |
139 |
2/4
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
|
4 |
Formula formula("3Cz3H12O6N14L2"); |
140 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
formula.setForceCountIndex(false); |
141 |
|
|
|
142 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("Checking fails") |
143 |
|
|
{ |
144 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 20 taken 4 times.
✗ Branch 21 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
✗ Branch 29 not taken.
✗ Branch 30 not taken.
|
4 |
REQUIRE(formula.checkSyntax() == false); |
145 |
|
4 |
} |
146 |
|
24 |
} |
147 |
|
|
|
148 |
8/14
✓ Branch 1 taken 20 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 20 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 20 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 20 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 20 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 20 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 16 times.
|
20 |
AND_WHEN( |
149 |
|
|
"Checking an invalid Formula ending not with an alphabetic character or a " |
150 |
|
|
"number") |
151 |
|
|
{ |
152 |
2/4
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
|
4 |
Formula formula("Cz3H12O6N14L2§"); |
153 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
formula.setForceCountIndex(false); |
154 |
|
|
|
155 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("Checking fails") |
156 |
|
|
{ |
157 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 20 taken 4 times.
✗ Branch 21 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
✗ Branch 29 not taken.
✗ Branch 30 not taken.
|
4 |
REQUIRE(formula.checkSyntax() == false); |
158 |
|
4 |
} |
159 |
|
24 |
} |
160 |
|
20 |
} |
161 |
|
|
|
162 |
|
8 |
SCENARIO("Validation of an action Formula, with or without a title") |
163 |
|
|
{ |
164 |
1/2
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
|
8 |
IsotopicDataLibraryHandler iso_data_lib_handler; |
165 |
|
|
|
166 |
|
8 |
std::size_t non_isotope_skipped_items = 0; |
167 |
|
|
std::size_t loaded_isotope_count = |
168 |
1/2
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
|
8 |
iso_data_lib_handler.loadData(non_isotope_skipped_items); |
169 |
|
|
|
170 |
|
8 |
IsotopicDataCstSPtr isotopic_data_csp = nullptr; |
171 |
|
|
|
172 |
5/14
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 8 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 8 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
|
8 |
REQUIRE(loaded_isotope_count + non_isotope_skipped_items == |
173 |
|
|
IsoSpec::isospec_number_of_isotopic_entries); |
174 |
|
|
|
175 |
1/2
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
|
8 |
isotopic_data_csp = iso_data_lib_handler.getIsotopicData(); |
176 |
6/16
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 8 taken 8 times.
✗ Branch 9 not taken.
✓ Branch 11 taken 8 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 8 times.
✗ Branch 15 not taken.
✓ Branch 17 taken 8 times.
✗ Branch 18 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✗ Branch 27 not taken.
✗ Branch 28 not taken.
✗ Branch 30 not taken.
✗ Branch 31 not taken.
|
8 |
REQUIRE(isotopic_data_csp->size() == loaded_isotope_count); |
177 |
|
|
|
178 |
1/2
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
|
8 |
Formula formula_MA_dipeptidyl(action_formula_string_MA_dipeptidyl); |
179 |
1/2
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
|
8 |
Formula titled_formula_MA_dipeptidyl(action_formula_string_with_title); |
180 |
|
|
|
181 |
7/14
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 8 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 8 times.
✗ Branch 24 not taken.
|
8 |
WHEN("Constructed, the formula string is set to the member datum as is") |
182 |
|
|
{ |
183 |
8/20
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 8 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 8 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 8 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 8 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 8 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
8 |
REQUIRE(formula_MA_dipeptidyl.toString().toStdString() == |
184 |
|
|
action_formula_string_MA_dipeptidyl.toStdString()); |
185 |
8/20
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 8 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 8 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 8 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 8 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 8 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
8 |
REQUIRE(titled_formula_MA_dipeptidyl.toString().toStdString() == |
186 |
|
|
action_formula_string_with_title.toStdString()); |
187 |
|
|
|
188 |
7/14
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 8 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 8 times.
✗ Branch 24 not taken.
|
8 |
AND_WHEN("Validated, the Formula creates + and - subformulas") |
189 |
|
|
{ |
190 |
|
8 |
bool reset_symbol_count_map = true; |
191 |
|
8 |
bool store_symbol_count_map = true; |
192 |
|
|
|
193 |
1/2
✓ Branch 2 taken 8 times.
✗ Branch 3 not taken.
|
8 |
formula_MA_dipeptidyl.validate( |
194 |
|
|
isotopic_data_csp, store_symbol_count_map, reset_symbol_count_map); |
195 |
1/2
✓ Branch 2 taken 8 times.
✗ Branch 3 not taken.
|
8 |
titled_formula_MA_dipeptidyl.validate( |
196 |
|
|
isotopic_data_csp, store_symbol_count_map, reset_symbol_count_map); |
197 |
|
|
|
198 |
8/14
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 8 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 4 times.
|
8 |
THEN("The + and - sub formulas are checked") |
199 |
|
|
{ |
200 |
|
|
// "+C5H11N1O2S1-H20+C3H7N1O2-H2O" |
201 |
7/18
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 25 taken 4 times.
✗ Branch 26 not taken.
✗ Branch 33 not taken.
✗ Branch 34 not taken.
✗ Branch 36 not taken.
✗ Branch 37 not taken.
|
4 |
REQUIRE(formula_MA_dipeptidyl.plusFormula().toStdString() == |
202 |
|
|
"C5H11N1O2S1C3H7N1O2"); |
203 |
7/18
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 25 taken 4 times.
✗ Branch 26 not taken.
✗ Branch 33 not taken.
✗ Branch 34 not taken.
✗ Branch 36 not taken.
✗ Branch 37 not taken.
|
4 |
REQUIRE(formula_MA_dipeptidyl.minusFormula().toStdString() == |
204 |
|
|
"H2O1H2O1"); |
205 |
|
|
|
206 |
7/18
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 25 taken 4 times.
✗ Branch 26 not taken.
✗ Branch 33 not taken.
✗ Branch 34 not taken.
✗ Branch 36 not taken.
✗ Branch 37 not taken.
|
4 |
REQUIRE(titled_formula_MA_dipeptidyl.plusFormula().toStdString() == |
207 |
|
|
"C5H11N1O2S1C3H7N1O2"); |
208 |
7/18
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 25 taken 4 times.
✗ Branch 26 not taken.
✗ Branch 33 not taken.
✗ Branch 34 not taken.
✗ Branch 36 not taken.
✗ Branch 37 not taken.
|
4 |
REQUIRE(titled_formula_MA_dipeptidyl.minusFormula().toStdString() == |
209 |
|
|
"H2O1H2O1"); |
210 |
|
8 |
} |
211 |
|
|
|
212 |
8/14
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 8 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 4 times.
|
8 |
AND_THEN( |
213 |
|
|
"The symbol counts can be used to craft a new integrated " |
214 |
|
|
"elemental composition string formula") |
215 |
|
|
{ |
216 |
|
|
// Expecting result of "C5H11N1O2S1C3H7N1O2" - "H2O1H2O1" |
217 |
|
|
// which is C8H18N2O4S1 - H4O2 |
218 |
|
|
// which is C8H14N2O2S1 |
219 |
|
4 |
std::vector<std::pair<QString, double>> symbol_count_pairs; |
220 |
|
|
QString elemental_composition = |
221 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
formula_MA_dipeptidyl.elementalComposition(&symbol_count_pairs); |
222 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
✗ Branch 31 not taken.
✗ Branch 32 not taken.
|
4 |
REQUIRE(elemental_composition.toStdString() == "C8H14N2O2S1"); |
223 |
|
|
|
224 |
|
|
elemental_composition = |
225 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
titled_formula_MA_dipeptidyl.elementalComposition(&symbol_count_pairs); |
226 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
✗ Branch 31 not taken.
✗ Branch 32 not taken.
|
4 |
REQUIRE(elemental_composition.toStdString() == "C8H14N2O2S1"); |
227 |
|
|
|
228 |
|
|
const std::map<QString, double> &formula_symbol_count_map = |
229 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
formula_MA_dipeptidyl.symbolCountMap(); |
230 |
|
|
|
231 |
2/4
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
|
4 |
auto map_iterator = formula_symbol_count_map.find("C"); |
232 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 8 taken 4 times.
✗ Branch 9 not taken.
✓ Branch 11 taken 4 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 4 times.
✗ Branch 15 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 24 not taken.
✗ Branch 25 not taken.
✗ Branch 27 not taken.
✗ Branch 28 not taken.
|
4 |
REQUIRE(map_iterator->second == 8); |
233 |
2/4
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
|
4 |
map_iterator = formula_symbol_count_map.find("H"); |
234 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 8 taken 4 times.
✗ Branch 9 not taken.
✓ Branch 11 taken 4 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 4 times.
✗ Branch 15 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 24 not taken.
✗ Branch 25 not taken.
✗ Branch 27 not taken.
✗ Branch 28 not taken.
|
4 |
REQUIRE(map_iterator->second == 14); |
235 |
2/4
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
|
4 |
map_iterator = formula_symbol_count_map.find("N"); |
236 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 8 taken 4 times.
✗ Branch 9 not taken.
✓ Branch 11 taken 4 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 4 times.
✗ Branch 15 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 24 not taken.
✗ Branch 25 not taken.
✗ Branch 27 not taken.
✗ Branch 28 not taken.
|
4 |
REQUIRE(map_iterator->second == 2); |
237 |
2/4
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
|
4 |
map_iterator = formula_symbol_count_map.find("O"); |
238 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 8 taken 4 times.
✗ Branch 9 not taken.
✓ Branch 11 taken 4 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 4 times.
✗ Branch 15 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 24 not taken.
✗ Branch 25 not taken.
✗ Branch 27 not taken.
✗ Branch 28 not taken.
|
4 |
REQUIRE(map_iterator->second == 2); |
239 |
2/4
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
|
4 |
map_iterator = formula_symbol_count_map.find("S"); |
240 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 8 taken 4 times.
✗ Branch 9 not taken.
✓ Branch 11 taken 4 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 4 times.
✗ Branch 15 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 24 not taken.
✗ Branch 25 not taken.
✗ Branch 27 not taken.
✗ Branch 28 not taken.
|
4 |
REQUIRE(map_iterator->second == 1); |
241 |
|
12 |
} |
242 |
|
8 |
} |
243 |
|
8 |
} |
244 |
|
8 |
} |
245 |
|
|
|
246 |
|
|
|
247 |
|
24 |
SCENARIO("Various ways to account a Formula for its masses (mono, avg)") |
248 |
|
|
{ |
249 |
1/2
✓ Branch 1 taken 24 times.
✗ Branch 2 not taken.
|
24 |
IsotopicDataLibraryHandler iso_data_lib_handler; |
250 |
|
|
|
251 |
|
24 |
std::size_t non_isotope_skipped_items = 0; |
252 |
|
|
std::size_t loaded_isotope_count = |
253 |
1/2
✓ Branch 1 taken 24 times.
✗ Branch 2 not taken.
|
24 |
iso_data_lib_handler.loadData(non_isotope_skipped_items); |
254 |
|
|
|
255 |
|
24 |
IsotopicDataCstSPtr isotopic_data_csp = nullptr; |
256 |
|
|
|
257 |
5/14
✓ Branch 4 taken 24 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 24 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 24 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 24 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 24 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
|
24 |
REQUIRE(loaded_isotope_count + non_isotope_skipped_items == |
258 |
|
|
IsoSpec::isospec_number_of_isotopic_entries); |
259 |
|
|
|
260 |
1/2
✓ Branch 1 taken 24 times.
✗ Branch 2 not taken.
|
24 |
isotopic_data_csp = iso_data_lib_handler.getIsotopicData(); |
261 |
6/16
✓ Branch 4 taken 24 times.
✗ Branch 5 not taken.
✓ Branch 8 taken 24 times.
✗ Branch 9 not taken.
✓ Branch 11 taken 24 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 24 times.
✗ Branch 15 not taken.
✓ Branch 17 taken 24 times.
✗ Branch 18 not taken.
✓ Branch 21 taken 24 times.
✗ Branch 22 not taken.
✗ Branch 27 not taken.
✗ Branch 28 not taken.
✗ Branch 30 not taken.
✗ Branch 31 not taken.
|
24 |
REQUIRE(isotopic_data_csp->size() == loaded_isotope_count); |
262 |
|
|
|
263 |
1/2
✓ Branch 1 taken 24 times.
✗ Branch 2 not taken.
|
24 |
Formula formula_MA_dipeptidyl(action_formula_string_MA_dipeptidyl); |
264 |
|
|
|
265 |
8/14
✓ Branch 1 taken 24 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 24 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 24 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 24 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 24 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 24 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 20 times.
|
24 |
WHEN("A Formula is created from string") |
266 |
|
|
{ |
267 |
|
|
|
268 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("Only its string formula is updated") |
269 |
|
|
{ |
270 |
8/20
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 22 taken 4 times.
✗ Branch 23 not taken.
✓ Branch 29 taken 4 times.
✗ Branch 30 not taken.
✗ Branch 38 not taken.
✗ Branch 39 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
|
4 |
REQUIRE(formula_MA_dipeptidyl.toString().toStdString() == |
271 |
|
|
action_formula_string_MA_dipeptidyl.toStdString()); |
272 |
|
4 |
} |
273 |
|
24 |
} |
274 |
|
|
|
275 |
8/14
✓ Branch 1 taken 24 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 24 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 24 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 24 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 24 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 24 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 20 times.
|
24 |
AND_WHEN( |
276 |
|
|
"That formula is validated with adequate options, its other member data " |
277 |
|
|
"are updated") |
278 |
|
|
{ |
279 |
|
4 |
bool reset_symbol_count_map = true; |
280 |
|
4 |
bool store_symbol_count_map = true; |
281 |
|
|
|
282 |
1/2
✓ Branch 2 taken 4 times.
✗ Branch 3 not taken.
|
4 |
formula_MA_dipeptidyl.validate( |
283 |
|
|
isotopic_data_csp, store_symbol_count_map, reset_symbol_count_map); |
284 |
|
|
|
285 |
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
|
4 |
THEN("The + and - sub formulas are checked") |
286 |
|
|
{ |
287 |
|
|
// "+C5H11N1O2S1-H20+C3H7N1O2-H2O" |
288 |
7/18
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 25 taken 4 times.
✗ Branch 26 not taken.
✗ Branch 33 not taken.
✗ Branch 34 not taken.
✗ Branch 36 not taken.
✗ Branch 37 not taken.
|
4 |
REQUIRE(formula_MA_dipeptidyl.plusFormula().toStdString() == |
289 |
|
|
"C5H11N1O2S1C3H7N1O2"); |
290 |
7/18
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 19 taken 4 times.
✗ Branch 20 not taken.
✓ Branch 25 taken 4 times.
✗ Branch 26 not taken.
✗ Branch 33 not taken.
✗ Branch 34 not taken.
✗ Branch 36 not taken.
✗ Branch 37 not taken.
|
4 |
REQUIRE(formula_MA_dipeptidyl.minusFormula().toStdString() == "H2O1H2O1"); |
291 |
|
4 |
} |
292 |
|
24 |
} |
293 |
|
|
|
294 |
8/14
✓ Branch 1 taken 24 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 24 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 24 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 24 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 24 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 24 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 16 times.
✓ Branch 24 taken 8 times.
|
24 |
AND_WHEN("Masses are accounted for the action-formula") |
295 |
|
|
{ |
296 |
|
|
|
297 |
8/14
✓ Branch 1 taken 16 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 16 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 16 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 16 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 16 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 16 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 12 times.
|
16 |
THEN("Mono and avg masses are updated in ony possible way") |
298 |
|
|
{ |
299 |
|
4 |
double mono = 0; |
300 |
|
4 |
double avg = 0; |
301 |
|
4 |
bool result = false; |
302 |
|
|
|
303 |
|
|
result = |
304 |
1/2
✓ Branch 2 taken 4 times.
✗ Branch 3 not taken.
|
4 |
formula_MA_dipeptidyl.accountMasses(isotopic_data_csp, &mono, &avg, 1); |
305 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
|
4 |
REQUIRE(result == true); |
306 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 25 not taken.
✗ Branch 26 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
|
4 |
REQUIRE_THAT(mono, |
307 |
|
|
Catch::Matchers::WithinAbs(202.07759887468, 0.0000000001)); |
308 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 25 not taken.
✗ Branch 26 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
|
4 |
REQUIRE_THAT( |
309 |
|
|
avg, Catch::Matchers::WithinAbs(202.274890194285717, 0.0000000001)); |
310 |
|
16 |
} |
311 |
|
|
|
312 |
8/14
✓ Branch 1 taken 16 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 16 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 16 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 16 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 16 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 16 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 12 times.
|
16 |
AND_THEN("In another possible way") |
313 |
|
|
{ |
314 |
|
4 |
double mono = 0; |
315 |
|
4 |
double avg = 0; |
316 |
|
4 |
bool result = false; |
317 |
|
|
|
318 |
|
|
result = |
319 |
1/2
✓ Branch 2 taken 4 times.
✗ Branch 3 not taken.
|
4 |
formula_MA_dipeptidyl.accountMasses(isotopic_data_csp, &mono, &avg, 10); |
320 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
|
4 |
REQUIRE(result == true); |
321 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 25 not taken.
✗ Branch 26 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
|
4 |
REQUIRE_THAT( |
322 |
|
|
mono, Catch::Matchers::WithinAbs(202.07759887468 * 10, 0.0000000001)); |
323 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 25 not taken.
✗ Branch 26 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
|
4 |
REQUIRE_THAT( |
324 |
|
|
avg, |
325 |
|
|
Catch::Matchers::WithinAbs(202.274890194285717 * 10, 0.0000000001)); |
326 |
|
16 |
} |
327 |
|
|
|
328 |
8/14
✓ Branch 1 taken 16 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 16 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 16 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 16 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 16 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 16 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 12 times.
|
16 |
AND_THEN("In another possible way") |
329 |
|
|
{ |
330 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
Ponderable ponderable(0, 0); |
331 |
|
4 |
bool result = false; |
332 |
|
|
|
333 |
|
|
result = |
334 |
1/2
✓ Branch 2 taken 4 times.
✗ Branch 3 not taken.
|
4 |
formula_MA_dipeptidyl.accountMasses(isotopic_data_csp, &ponderable, 1); |
335 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
|
4 |
REQUIRE(result == true); |
336 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
✗ Branch 31 not taken.
✗ Branch 32 not taken.
|
4 |
REQUIRE_THAT(ponderable.mono(), |
337 |
|
|
Catch::Matchers::WithinAbs(202.07759887468, 0.0000000001)); |
338 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
✗ Branch 31 not taken.
✗ Branch 32 not taken.
|
4 |
REQUIRE_THAT( |
339 |
|
|
ponderable.avg(), |
340 |
|
|
Catch::Matchers::WithinAbs(202.274890194285717, 0.0000000001)); |
341 |
|
20 |
} |
342 |
|
|
|
343 |
8/14
✓ Branch 1 taken 16 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 16 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 16 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 16 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 16 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 16 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 12 times.
|
16 |
AND_THEN("In another possible way") |
344 |
|
|
{ |
345 |
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
|
4 |
Ponderable ponderable(0, 0); |
346 |
|
4 |
bool result = false; |
347 |
|
|
|
348 |
|
|
result = |
349 |
1/2
✓ Branch 2 taken 4 times.
✗ Branch 3 not taken.
|
4 |
formula_MA_dipeptidyl.accountMasses(isotopic_data_csp, &ponderable, 10); |
350 |
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
|
4 |
REQUIRE(result == true); |
351 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
✗ Branch 31 not taken.
✗ Branch 32 not taken.
|
4 |
REQUIRE_THAT( |
352 |
|
|
ponderable.mono(), |
353 |
|
|
Catch::Matchers::WithinAbs(202.07759887468 * 10, 0.0000000001)); |
354 |
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
✗ Branch 31 not taken.
✗ Branch 32 not taken.
|
4 |
REQUIRE_THAT( |
355 |
|
|
ponderable.avg(), |
356 |
|
|
Catch::Matchers::WithinAbs(202.274890194285717 * 10, 0.0000000001)); |
357 |
|
20 |
} |
358 |
|
24 |
} |
359 |
|
24 |
} |
360 |
|
|
|
361 |
|
|
|
362 |
|
|
} // namespace libXpertMass |
363 |
|
|
} // namespace MsXpS |
364 |
|
|
|