GCC Code Coverage Report

Line	Branch	Exec	Source
1			// ./tests/catch2-tests [section] -s
2
3
4			/////////////////////// Qt includes
5			#include <QDebug>
6			#include <QString>
7			#include <QDir>
8
9
10			/////////////////////// IsoSpec
11			#include <IsoSpec++/isoSpec++.h>
12			#include <IsoSpec++/element_tables.h>
13
14
15			/////////////////////// Catch2 includes
16			#include <catch2/catch_test_macros.hpp>
17			#include <catch2/matchers/catch_matchers_floating_point.hpp>
18
19
20			/////////////////////// Local includes
21			#include "tests-config.h"
22			#include <libXpertMass/PolChemDef.hpp>
23			#include <libXpertMass/Formula.hpp>
24			#include <libXpertMass/IonizeRule.hpp>
25			#include <libXpertMass/IsotopicDataLibraryHandler.hpp>
26
27			namespace MsXpS
28			{
29
30			namespace libXpertMass
31			{
32
33		28	SCENARIO("An IonizeRule is used to attach charges to chemical entities")
34			{
35
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37			{
38	1/2 ✓ Branch 1 taken 28 times. ✗ Branch 2 not taken.	28	IonizeRule ionize_rule_1;
39
40	8/14 ✓ Branch 1 taken 28 times. ✗ Branch 2 not taken. ✓ Branch 4 taken 28 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 28 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 28 times. ✗ Branch 11 not taken. ✓ Branch 15 taken 28 times. ✗ Branch 16 not taken. ✓ Branch 21 taken 28 times. ✗ Branch 22 not taken. ✓ Branch 23 taken 4 times. ✓ Branch 24 taken 24 times.	28	THEN("The member data are set to 0 and the IonizeRule is not valid")
41			{
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46		28	}
47
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49			{
50	2/4 ✓ Branch 1 taken 24 times. ✗ Branch 2 not taken. ✓ Branch 4 taken 24 times. ✗ Branch 5 not taken.	24	ionize_rule_1.setFormula("\"Protonation\"+H");
51	1/2 ✓ Branch 1 taken 24 times. ✗ Branch 2 not taken.	24	ionize_rule_1.setCharge(1);
52	1/2 ✓ Branch 1 taken 24 times. ✗ Branch 2 not taken.	24	ionize_rule_1.setLevel(1);
53
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55			{
56	7/18 ✓ Branch 4 taken 4 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 4 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 4 times. ✗ Branch 11 not taken. ✓ Branch 13 taken 4 times. ✗ Branch 14 not taken. ✓ Branch 16 taken 4 times. ✗ Branch 17 not taken. ✓ Branch 19 taken 4 times. ✗ Branch 20 not taken. ✓ Branch 25 taken 4 times. ✗ Branch 26 not taken. ✗ Branch 33 not taken. ✗ Branch 34 not taken. ✗ Branch 36 not taken. ✗ Branch 37 not taken.	4	REQUIRE(ionize_rule_1.formula().toStdString() == "\"Protonation\"+H");
57	6/16 ✓ Branch 4 taken 4 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 4 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 4 times. ✗ Branch 11 not taken. ✓ Branch 13 taken 4 times. ✗ Branch 14 not taken. ✓ Branch 16 taken 4 times. ✗ Branch 17 not taken. ✓ Branch 20 taken 4 times. ✗ Branch 21 not taken. ✗ Branch 26 not taken. ✗ Branch 27 not taken. ✗ Branch 29 not taken. ✗ Branch 30 not taken.	4	REQUIRE(ionize_rule_1.charge() == 1);
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59		24	}
60
61	8/14 ✓ Branch 1 taken 24 times. ✗ Branch 2 not taken. ✓ Branch 4 taken 24 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 24 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 24 times. ✗ Branch 11 not taken. ✓ Branch 15 taken 24 times. ✗ Branch 16 not taken. ✓ Branch 21 taken 24 times. ✗ Branch 22 not taken. ✓ Branch 23 taken 8 times. ✓ Branch 24 taken 16 times.	24	GIVEN(
62			"Construction of a new copy of that IonizeRule by the copy constructor")
63			{
64	1/2 ✓ Branch 1 taken 8 times. ✗ Branch 2 not taken.	8	IonizeRule ionize_rule_2(ionize_rule_1);
65
66	8/14 ✓ Branch 1 taken 8 times. ✗ Branch 2 not taken. ✓ Branch 4 taken 8 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 8 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 8 times. ✗ Branch 11 not taken. ✓ Branch 15 taken 8 times. ✗ Branch 16 not taken. ✓ Branch 21 taken 8 times. ✗ Branch 22 not taken. ✓ Branch 23 taken 4 times. ✓ Branch 24 taken 4 times.	8	THEN("The members should be identical to the former IonizeRule")
67			{
68	7/18 ✓ Branch 4 taken 4 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 4 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 4 times. ✗ Branch 11 not taken. ✓ Branch 13 taken 4 times. ✗ Branch 14 not taken. ✓ Branch 16 taken 4 times. ✗ Branch 17 not taken. ✓ Branch 19 taken 4 times. ✗ Branch 20 not taken. ✓ Branch 25 taken 4 times. ✗ Branch 26 not taken. ✗ Branch 33 not taken. ✗ Branch 34 not taken. ✗ Branch 36 not taken. ✗ Branch 37 not taken.	4	REQUIRE(ionize_rule_2.formula().toStdString() == "\"Protonation\"+H");
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71		8	}
72
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74			{
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77		8	}
78		32	}
79
80	8/14 ✓ Branch 1 taken 24 times. ✗ Branch 2 not taken. ✓ Branch 4 taken 24 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 24 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 24 times. ✗ Branch 11 not taken. ✓ Branch 15 taken 24 times. ✗ Branch 16 not taken. ✓ Branch 21 taken 24 times. ✗ Branch 22 not taken. ✓ Branch 23 taken 8 times. ✓ Branch 24 taken 16 times.	24	AND_GIVEN("Construction of a new copy of that IonizeRule by assignment")
81			{
82	1/2 ✓ Branch 1 taken 8 times. ✗ Branch 2 not taken.	8	IonizeRule ionize_rule_3 = ionize_rule_1;
83
84	8/14 ✓ Branch 1 taken 8 times. ✗ Branch 2 not taken. ✓ Branch 4 taken 8 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 8 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 8 times. ✗ Branch 11 not taken. ✓ Branch 15 taken 8 times. ✗ Branch 16 not taken. ✓ Branch 21 taken 8 times. ✗ Branch 22 not taken. ✓ Branch 23 taken 4 times. ✓ Branch 24 taken 4 times.	8	THEN("The members should be identical to the former IonizeRule")
85			{
86	7/18 ✓ Branch 4 taken 4 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 4 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 4 times. ✗ Branch 11 not taken. ✓ Branch 13 taken 4 times. ✗ Branch 14 not taken. ✓ Branch 16 taken 4 times. ✗ Branch 17 not taken. ✓ Branch 19 taken 4 times. ✗ Branch 20 not taken. ✓ Branch 25 taken 4 times. ✗ Branch 26 not taken. ✗ Branch 33 not taken. ✗ Branch 34 not taken. ✗ Branch 36 not taken. ✗ Branch 37 not taken.	4	REQUIRE(ionize_rule_3.formula().toStdString() == "\"Protonation\"+H");
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89		8	}
90
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92			{
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95		8	}
96		32	}
97
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99			{
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101			{
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103		4	}
104		24	}
105		28	}
106		56	}
107		28	}
108
109
110		20	SCENARIO(
111			"An IonizeRule correctly initialized should validate against reference "
112			"IsotopicData")
113			{
114	1/2 ✓ Branch 1 taken 20 times. ✗ Branch 2 not taken.	20	IonizeRule ionize_rule_1;
115
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117			{
118	1/2 ✓ Branch 1 taken 20 times. ✗ Branch 2 not taken.	20	IonizeRule ionize_rule_1;
119
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121			{
122	2/4 ✓ Branch 1 taken 20 times. ✗ Branch 2 not taken. ✓ Branch 4 taken 20 times. ✗ Branch 5 not taken.	20	ionize_rule_1.setFormula("\"Protonation\"+H");
123	1/2 ✓ Branch 1 taken 20 times. ✗ Branch 2 not taken.	20	ionize_rule_1.setCharge(1);
124	1/2 ✓ Branch 1 taken 20 times. ✗ Branch 2 not taken.	20	ionize_rule_1.setLevel(1);
125
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127			{
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131		20	}
132
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134			{
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136		20	}
137
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139			{
140	1/2 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken.	4	IsotopicDataLibraryHandler iso_data_lib_handler;
141
142		4	std::size_t non_isotope_skipped_items = 0;
143			std::size_t loaded_isotope_count =
144	1/2 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken.	4	iso_data_lib_handler.loadData(non_isotope_skipped_items);
145
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147
148			bool result =
149	2/4 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken. ✓ Branch 5 taken 4 times. ✗ Branch 6 not taken.	4	ionize_rule_1.validate(iso_data_lib_handler.getIsotopicData());
150
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152			{
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154		4	}
155		24	}
156
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158			{
159	1/2 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken.	4	QString output = ionize_rule_1.toString();
160
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162			{
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164			"Formula: \"Protonation\"+H - charge: 1 -- level: 1");
165		4	}
166		24	}
167
168
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170			{
171			QString *output_xml_p =
172	2/4 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken. ✓ Branch 4 taken 4 times. ✗ Branch 5 not taken.	4	ionize_rule_1.formatXmlIonizeRuleElement(0, " ");
173
174	1/2 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken.	4	QString theoretically_expected = "";
175	1/2 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken.	4	theoretically_expected += "<ionizerule>\n";
176	1/2 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken.	4	theoretically_expected += " <formula>\"Protonation\"+H</formula>\n";
177	1/2 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken.	4	theoretically_expected += " <charge>1</charge>\n";
178	1/2 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken.	4	theoretically_expected += " <level>1</level>\n";
179	1/2 ✓ Branch 1 taken 4 times. ✗ Branch 2 not taken.	4	theoretically_expected += "</ionizerule>\n";
180
181	7/18 ✓ Branch 4 taken 4 times. ✗ Branch 5 not taken. ✓ Branch 7 taken 4 times. ✗ Branch 8 not taken. ✓ Branch 10 taken 4 times. ✗ Branch 11 not taken. ✓ Branch 13 taken 4 times. ✗ Branch 14 not taken. ✓ Branch 16 taken 4 times. ✗ Branch 17 not taken. ✓ Branch 19 taken 4 times. ✗ Branch 20 not taken. ✓ Branch 25 taken 4 times. ✗ Branch 26 not taken. ✗ Branch 33 not taken. ✗ Branch 34 not taken. ✗ Branch 36 not taken. ✗ Branch 37 not taken.	4	REQUIRE(output_xml_p->toStdString() ==
182			theoretically_expected.toStdString());
183		24	}
184		20	}
185		40	}
186		20	}
187
188
189			} // namespace libXpertMass
190			} // namespace MsXpS
191

Function (Line)	Call count	Block coverage
MsXpS::libXpertMass::CATCH2_INTERNAL_TEST_0() (line 33)	called 28 times, returned 28 times	48.0%
MsXpS::libXpertMass::CATCH2_INTERNAL_TEST_14() (line 110)	called 20 times, returned 20 times	49.0%