GCC Code Coverage Report

./
File: tests/test_IsotopicDataLibraryHandler.cpp
Date: 2024-08-24 11:26:06
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1 // ./tests/catch2-tests [section] -s
2
3
4 /////////////////////// Qt includes
5 #include <QDebug>
6 #include <QString>
7 #include <QDir>
8
9 /////////////////////// IsoSpec
10 #include <IsoSpec++/isoSpec++.h>
11 #include <IsoSpec++/element_tables.h>
12
13
14 /////////////////////// Catch2 includes
15 #include <catch2/catch_test_macros.hpp>
16 #include <catch2/catch_approx.hpp>
17
18
19 /////////////////////// Local includes
20 #include "tests-config.h"
21 #include <libXpertMass/Isotope.hpp>
22 #include <libXpertMass/IsotopicDataLibraryHandler.hpp>
23
24 namespace MsXpS
25 {
26
27 namespace libXpertMass
28 {
29
30
31 IsotopicDataLibraryHandler iso_data_lib_handler;
32
33
34 12 SCENARIO("IsotopicDataLibraryHandler loads data from IsoSpec++'s tables")
35 {
36
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 12 WHEN("Constructed, the data are empty")
38 {
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 4 THEN("The isotopic data are empty but they are allocated")
41 {
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 4 REQUIRE(iso_data_lib_handler.getIsotopicData() != nullptr);
43 4 }
44 12 }
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 12 AND_WHEN("Loading isotopic data from library")
47 {
48 4 std::size_t non_isotope_skipped_items = 0;
49 std::size_t loaded_isotope_count =
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 4 iso_data_lib_handler.loadData(non_isotope_skipped_items);
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 4 THEN("The number of isotopes loaded is checked")
53 {
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 4 REQUIRE(loaded_isotope_count + non_isotope_skipped_items ==
55 IsoSpec::isospec_number_of_isotopic_entries);
56
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 4 REQUIRE(iso_data_lib_handler.getIsotopicData()->size() ==
57 loaded_isotope_count);
58 4 }
59 12 }
60
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 12 AND_WHEN("A new IsotopicDataLibraryHandler instance is copy constructed")
62 {
63 long use_count_before_copy =
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 4 iso_data_lib_handler.getIsotopicData().use_count();
65
66 4 IsotopicDataLibraryHandler iso_data_lib_handler_1(iso_data_lib_handler);
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68
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 4 THEN("The instances are checked and should be identical")
69 {
70
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 4 REQUIRE(iso_data_lib_handler.getIsotopicData()->size() ==
71 iso_data_lib_handler_1.getIsotopicData()->size());
72
73 long use_count_after_copy =
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 4 iso_data_lib_handler.getIsotopicData().use_count();
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 4 REQUIRE(use_count_after_copy == use_count_before_copy + 1);
77 4 }
78 16 }
79 12 }
80
81 8 SCENARIO("IsotopicDataLibraryHandler writes data to file")
82 {
83
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 8 WHEN("Data have been loaded, the data are checked")
85 {
86 8 std::size_t non_isotope_skipped_items = 0;
87 std::size_t loaded_isotope_count =
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 8 iso_data_lib_handler.loadData(non_isotope_skipped_items);
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 8 THEN("The number of isotopes loaded is checked")
91 {
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 4 REQUIRE(loaded_isotope_count + non_isotope_skipped_items ==
93 IsoSpec::isospec_number_of_isotopic_entries);
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 4 REQUIRE(iso_data_lib_handler.getIsotopicData()->size() ==
95 loaded_isotope_count);
96 8 }
97
98
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 8 AND_WHEN("Isotopic data are written to file")
99 {
100 QString isotopes_output_dir =
101
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 12 QString("%1/%2").arg(TESTS_OUTPUT_DIR).arg("isotopes");
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 4 QDir dir;
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 4 bool result = dir.mkpath(isotopes_output_dir);
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 4 REQUIRE(result == true);
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107 QString output_file_name =
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 12 QString("%1/%2").arg(isotopes_output_dir).arg("isospec-tables.dat");
109
110 // qDebug() << "The write file name: " << output_file_name.toStdString() << std::endl;
111
112 std::size_t written_isotope_count =
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 4 iso_data_lib_handler.writeData(output_file_name);
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 4 THEN("The count of written isotopes is checked")
116 {
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 4 REQUIRE(written_isotope_count == loaded_isotope_count);
118 4 }
119 12 }
120 8 }
121 8 }
122
123
124 } // namespace libXpertMass
125 } // namespace MsXpS
126