GCC Code Coverage Report

./
File: tests/test_IsotopicDataManualConfigHandler.cpp
Date: 2024-08-24 11:26:06
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Functions:
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1 // ./tests/catch2-tests [section] -s
2
3
4 /////////////////////// Qt includes
5 #include <QDebug>
6 #include <QString>
7 #include <QDir>
8
9 /////////////////////// IsoSpec
10 #include <IsoSpec++/isoSpec++.h>
11 #include <IsoSpec++/element_tables.h>
12
13
14 /////////////////////// Catch2 includes
15 #include <catch2/catch_test_macros.hpp>
16
17 /////////////////////// Local includes
18 #include "tests-config.h"
19 #include <libXpertMass/Isotope.hpp>
20 #include <libXpertMass/IsotopicDataManualConfigHandler.hpp>
21
22 namespace MsXpS
23 {
24
25 namespace libXpertMass
26 {
27
28 QString file_base_name = "one-C14-radioactive-on-glucose-manual-config.dat";
29
30 QString isotopic_data_input_file_name =
31 QString("%1/%2/%3").arg(TESTS_INPUT_DIR).arg("isotopes", file_base_name);
32
33 QDir dir;
34 QString isotopes_output_dir =
35 QString("%1/%2").arg(TESTS_OUTPUT_DIR, "isotopes");
36
37 QString isotopic_data_output_file_name =
38 QString("%1/%2").arg(isotopes_output_dir, file_base_name);
39 // qDebug() << "The output file name: " <<
40 // isotopic_data_output_file_name.toStdString() << std::endl;
41
42 8 SCENARIO("IsotopicDataManualConfigHandler loads data from file")
43 {
44
45 IsotopicDataManualConfigHandler iso_data_user_config_handler(
46
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 8 isotopic_data_input_file_name);
47
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 8 WHEN("Constructed, the data are empty")
49 {
50
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 4 THEN("The isotopic data are empty but they are allocated")
52 {
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 4 REQUIRE(iso_data_user_config_handler.getIsotopicData() != nullptr);
54 4 }
55 8 }
56
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 8 AND_WHEN("Loading isotopic data from a user config file")
58 {
59 std::size_t loaded_isotope_count =
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 4 iso_data_user_config_handler.loadData(isotopic_data_input_file_name);
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 4 THEN("The number of isotopes loaded is checked")
63 {
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 4 REQUIRE(loaded_isotope_count > 0);
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 4 REQUIRE(iso_data_user_config_handler.getIsotopicData()->size() ==
66 loaded_isotope_count);
67 4 }
68 8 }
69 8 }
70
71 8 SCENARIO("IsotopicDataManualConfigHandler writes data to file")
72 {
73
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 8 bool result = dir.mkpath(isotopes_output_dir);
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 8 assert(result);
76
77 IsotopicDataManualConfigHandler iso_data_user_config_handler(
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 8 isotopic_data_input_file_name);
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 8 WHEN("Data have been loaded, the data are checked")
81 {
82 std::size_t loaded_isotope_count =
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 8 iso_data_user_config_handler.loadData(isotopic_data_input_file_name);
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 8 THEN("The number of isotopes loaded is checked")
86 {
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 4 REQUIRE(iso_data_user_config_handler.getIsotopicData()->size() ==
88 loaded_isotope_count);
89 8 }
90
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 8 AND_WHEN("Isotopic data are written to file")
92 {
93
94 std::size_t written_isotope_count =
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 4 iso_data_user_config_handler.writeData(isotopic_data_output_file_name);
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 4 THEN("The count of written isotopes is checked")
98 {
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 4 REQUIRE(written_isotope_count == loaded_isotope_count);
100 4 }
101 8 }
102 8 }
103 8 }
104
105 12 SCENARIO(
106 "IsotopicDataManualConfigHandler loads data from file previously "
107 "written by writeDate test")
108 {
109
110 IsotopicDataManualConfigHandler iso_data_user_config_handler(
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 12 isotopic_data_input_file_name);
112
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 12 WHEN("Constructed, the data are empty")
114 {
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 4 THEN("The isotopic data are empty but they are allocated")
117 {
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 4 REQUIRE(iso_data_user_config_handler.getIsotopicData() != nullptr);
119 4 }
120 12 }
121
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 12 AND_WHEN("Loading isotopic data from a user config file")
123 {
124 std::size_t loaded_isotope_count =
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 4 iso_data_user_config_handler.loadData(isotopic_data_output_file_name);
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 4 THEN("The number of isotopes loaded is checked")
128 {
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 4 REQUIRE(loaded_isotope_count > 0);
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 4 REQUIRE(iso_data_user_config_handler.getIsotopicData()->size() ==
131 loaded_isotope_count);
132 4 }
133 12 }
134
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 12 AND_WHEN("A new IsotopicDataManualConfigHandler instance is copy constructed")
136 {
137 long use_count_before_copy =
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 4 iso_data_user_config_handler.getIsotopicData().use_count();
139
140 IsotopicDataManualConfigHandler iso_data_user_config_handler_1(
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 4 iso_data_user_config_handler);
142
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 4 THEN("The instances are checked and should be identical")
144 {
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 4 REQUIRE(iso_data_user_config_handler.getIsotopicData()->size() ==
146 iso_data_user_config_handler_1.getIsotopicData()->size());
147
148 long use_count_after_copy =
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 4 iso_data_user_config_handler.getIsotopicData().use_count();
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 4 REQUIRE(use_count_after_copy == use_count_before_copy + 1);
152 4 }
153 16 }
154 12 }
155
156
157 } // namespace libXpertMass
158 } // namespace MsXpS
159