GCC Code Coverage Report

./
File: tests/test_IsotopicDataUserConfigHandler.cpp
Date: 2024-08-24 11:26:06
Lines:
60/60
100.0%
Functions:
3/3
100.0%
Branches:
191/416
45.9%
Line Branch Exec Source
1 // ./tests/catch2-tests [section] -s
2
3
4 /////////////////////// Qt includes
5 #include <QDebug>
6 #include <QString>
7 #include <QDir>
8
9 /////////////////////// IsoSpec
10 #include <IsoSpec++/isoSpec++.h>
11 #include <IsoSpec++/element_tables.h>
12
13
14 /////////////////////// Catch2 includes
15 #include <catch2/catch_test_macros.hpp>
16 #include <catch2/matchers/catch_matchers_floating_point.hpp>
17
18
19 /////////////////////// Local includes
20 #include "tests-config.h"
21 #include <libXpertMass/Isotope.hpp>
22 #include <libXpertMass/IsotopicDataUserConfigHandler.hpp>
23
24 namespace MsXpS
25 {
26
27 namespace libXpertMass
28 {
29
30 QString user_config_isotopic_data_file_name("light-c-n.dat");
31 QString isotopic_data_file_name =
32 QString("%1/%2/%3")
33 .arg(TESTS_INPUT_DIR, "isotopes", user_config_isotopic_data_file_name);
34
35 IsotopicDataUserConfigHandler
36 iso_data_user_config_handler(isotopic_data_file_name);
37
38
39 8 SCENARIO("IsotopicDataUserConfigHandler loads data from file")
40 {
41
42
8/14
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 8 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 4 times.
 8 WHEN("Constructed, the data are empty")
43 {
44
45
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
 4 THEN("The isotopic data are empty but they are allocated")
46 {
47
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
✗ Branch 31 not taken.
✗ Branch 32 not taken.
 4 REQUIRE(iso_data_user_config_handler.getIsotopicData() != nullptr);
48 4 }
49 8 }
50
51
8/14
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 8 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 4 times.
 8 AND_WHEN("Loading isotopic data from a user config file")
52 {
53 std::size_t loaded_isotope_count =
54
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
 4 iso_data_user_config_handler.loadData(isotopic_data_file_name);
55
56
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
 4 THEN("The number of isotopes loaded is checked")
57 {
58
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
 4 REQUIRE(loaded_isotope_count > 0);
59
7/18
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 11 taken 4 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 4 times.
✗ Branch 15 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✓ Branch 20 taken 4 times.
✗ Branch 21 not taken.
✓ Branch 25 taken 4 times.
✗ Branch 26 not taken.
✗ Branch 32 not taken.
✗ Branch 33 not taken.
✗ Branch 35 not taken.
✗ Branch 36 not taken.
 4 REQUIRE(iso_data_user_config_handler.getIsotopicData()->size() ==
60 loaded_isotope_count);
61 // FIXME: remove debug code belows
62 4 double prova = 0.025602148;
63
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✗ Branch 25 not taken.
✗ Branch 26 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
 4 REQUIRE_THAT(prova, Catch::Matchers::WithinAbs(0.025602148, 0.0000001));
64 4 }
65 8 }
66 8 }
67
68 12 SCENARIO(
69 "IsotopicDataUserConfigHandler loads data from file previously "
70 "written by writeDate test for IsotopicDataLibraryHandler")
71 {
72 isotopic_data_file_name =
73
2/4
✓ Branch 1 taken 12 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 12 times.
✗ Branch 5 not taken.
 12 QString("%1/%2/%3").arg(TESTS_OUTPUT_DIR, "isotopes", "isospec-tables.dat");
74
75
8/14
✓ Branch 1 taken 12 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 12 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 12 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 12 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 12 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 12 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 8 times.
 12 WHEN("Constructed, the data are empty")
76 {
77
78
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
 4 THEN("The isotopic data are empty but they are allocated")
79 {
80
6/16
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 16 taken 4 times.
✗ Branch 17 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✗ Branch 28 not taken.
✗ Branch 29 not taken.
✗ Branch 31 not taken.
✗ Branch 32 not taken.
 4 REQUIRE(iso_data_user_config_handler.getIsotopicData() != nullptr);
81 4 }
82 12 }
83
84
8/14
✓ Branch 1 taken 12 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 12 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 12 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 12 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 12 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 12 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 8 times.
 12 AND_WHEN("Loading isotopic data from a user config file")
85 {
86 std::size_t loaded_isotope_count =
87
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
 4 iso_data_user_config_handler.loadData(isotopic_data_file_name);
88
89
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
 4 THEN("The number of isotopes loaded is checked")
90 {
91
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
 4 REQUIRE(loaded_isotope_count > 0);
92
7/18
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 11 taken 4 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 4 times.
✗ Branch 15 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✓ Branch 20 taken 4 times.
✗ Branch 21 not taken.
✓ Branch 25 taken 4 times.
✗ Branch 26 not taken.
✗ Branch 32 not taken.
✗ Branch 33 not taken.
✗ Branch 35 not taken.
✗ Branch 36 not taken.
 4 REQUIRE(iso_data_user_config_handler.getIsotopicData()->size() ==
93 loaded_isotope_count);
94 4 }
95 12 }
96
97
8/14
✓ Branch 1 taken 12 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 12 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 12 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 12 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 12 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 12 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 8 times.
 12 AND_WHEN("A new IsotopicDataUserConfigHandler instance is copy constructed")
98 {
99 long use_count_before_copy =
100
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
 4 iso_data_user_config_handler.getIsotopicData().use_count();
101
102 IsotopicDataUserConfigHandler iso_data_user_config_handler_1(
103 4 iso_data_user_config_handler);
104
105
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
 4 THEN("The instances are checked and should be identical")
106 {
107
9/22
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 11 taken 4 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 4 times.
✗ Branch 15 not taken.
✓ Branch 18 taken 4 times.
✗ Branch 19 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 24 taken 4 times.
✗ Branch 25 not taken.
✓ Branch 27 taken 4 times.
✗ Branch 28 not taken.
✓ Branch 33 taken 4 times.
✗ Branch 34 not taken.
✗ Branch 41 not taken.
✗ Branch 42 not taken.
✗ Branch 44 not taken.
✗ Branch 45 not taken.
 4 REQUIRE(iso_data_user_config_handler.getIsotopicData()->size() ==
108 iso_data_user_config_handler_1.getIsotopicData()->size());
109
110 long use_count_after_copy =
111
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
 4 iso_data_user_config_handler.getIsotopicData().use_count();
112
113
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
 4 REQUIRE(use_count_after_copy == use_count_before_copy + 1);
114 4 }
115 16 }
116 12 }
117
118 8 SCENARIO("IsotopicDataUserConfigHandler writes data to file")
119 {
120
121
7/14
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 8 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 8 times.
✗ Branch 24 not taken.
 8 WHEN("Data have been loaded, the data are checked")
122 {
123 std::size_t loaded_isotope_count =
124
1/2
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
 8 iso_data_user_config_handler.loadData(isotopic_data_file_name);
125
126
8/14
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 8 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 4 times.
 8 THEN("The number of isotopes loaded is checked")
127 {
128
7/18
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 11 taken 4 times.
✗ Branch 12 not taken.
✓ Branch 14 taken 4 times.
✗ Branch 15 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✓ Branch 20 taken 4 times.
✗ Branch 21 not taken.
✓ Branch 25 taken 4 times.
✗ Branch 26 not taken.
✗ Branch 32 not taken.
✗ Branch 33 not taken.
✗ Branch 35 not taken.
✗ Branch 36 not taken.
 4 REQUIRE(iso_data_user_config_handler.getIsotopicData()->size() ==
129 loaded_isotope_count);
130 8 }
131
132
8/14
✓ Branch 1 taken 8 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 8 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 8 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 8 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 8 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 8 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✓ Branch 24 taken 4 times.
 8 AND_WHEN("Isotopic data are written to file")
133 {
134 QString isotopes_output_dir =
135
2/4
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
 4 QString("%1/%2").arg(TESTS_OUTPUT_DIR, "isotopes");
136
137
1/2
✓ Branch 2 taken 4 times.
✗ Branch 3 not taken.
 4 QDir dir;
138
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
 4 bool result = dir.mkpath(isotopes_output_dir);
139
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
 4 REQUIRE(result == true);
140
141
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
 8 QString output_file_name = QString("%1/%2").arg(
142
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
 4 isotopes_output_dir, user_config_isotopic_data_file_name);
143
144 // qDebug() << "The write file name: " << output_file_name.toStdString()
145 // << std::endl;
146
147 std::size_t written_isotope_count =
148
1/2
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
 4 iso_data_user_config_handler.writeData(output_file_name);
149
150
7/14
✓ Branch 1 taken 4 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 15 taken 4 times.
✗ Branch 16 not taken.
✓ Branch 21 taken 4 times.
✗ Branch 22 not taken.
✓ Branch 23 taken 4 times.
✗ Branch 24 not taken.
 4 THEN("The count of written isotopes is checked")
151 {
152
5/14
✓ Branch 4 taken 4 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 4 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 4 times.
✗ Branch 11 not taken.
✓ Branch 13 taken 4 times.
✗ Branch 14 not taken.
✓ Branch 17 taken 4 times.
✗ Branch 18 not taken.
✗ Branch 23 not taken.
✗ Branch 24 not taken.
✗ Branch 26 not taken.
✗ Branch 27 not taken.
 4 REQUIRE(written_isotope_count == loaded_isotope_count);
153 4 }
154 12 }
155 8 }
156 8 }
157
158
159 } // namespace libXpertMass
160 } // namespace MsXpS
161