libXpertMass Developer Documentation

Aqueous chemical reactions

These are the classes that are required to model the chemical reactions that occur in the aqueous phase.

MsXpS::libXpertMass::CleaveMotif

Model for specifying aqueous cleavage sites of Polymer Sequences

MsXpS::libXpertMass::CleaveRule

Model for specifying aqueous cleavage rules for refining cleavage specifications (CleaveSpec) of Polymer Sequences

MsXpS::libXpertMass::CleaveSpec

Model for specifying aqueous cleavage specifications (patterns) of Polymer Sequences

MsXpS::libXpertMass::CrossLink

Abstractions to work with a cross-link entity between Monomer instances

MsXpS::libXpertMass::CrossLinkList

List of CrossLink instances

MsXpS::libXpertMass::CrossLinker

Abstractions to define the chemical basis of a cross-linking reaction